PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5024_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 162aa    MW: 18115.6 Da    PI: 8.7655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5024_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.5e-0878120450
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 
                 +h+ +Er RR++i +++  L+el+P +    s+   Ka  L + ++Y
  RrC5024_p1  78 SHSLAERARREKISERLTLLQELVPGC----SRITGKAVLLDEITNY 120
                 79************************9....6777777777777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-1072120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.39274124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-1075120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-578120No hitNo description
PfamPF000101.9E-578120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MIPATVNVNR LAAHRPNLKA GSGEIVRSKR SKLDKSGSSE NLIEKCDGKC INKDDAEPPE  60
PPEDYIHVRA RRGQTADSHS LAERARREKI SERLTLLQEL VPGCSRITGK AVLLDEITNY  120
ALGNLLDQSK DFRHDTILLP RTCLDSQTHN SSRAMDLFKL RC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834932e-42AC183493.1 Brassica oleracea Contig B, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885587.12e-45predicted protein
SwissprotQ9LK481e-46BH077_ARATH; Transcription factor bHLH77
TrEMBLD7L3G13e-45D7L3G1_ARALL; Predicted protein
STRINGAl_scaffold_0003_25648e-45(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2140822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.12e-43bHLH family protein